Section: Software and Platforms

MPAGenomics

Participants : Quentin Grimonprez, Guillemette Marot, Alain Celisse.

MPAGenomics is a R package for multi-patients analysis of genomics markers. Its main contributor is Quentin Grimonprez. It enables to study several copy number and SNP data profiles at the same time. It offers wrappers from commonly used packages to offer a pipeline for beginners in R. It also proposes a special way of choosing some crucial parameters to change some default values which were not adapted in the original packages. For multi-patients analysis, it wraps some penalized regression methods implemented in HDPenReg. It is available on the Inria forge and should be released on the R-forge in January.